Hari S. Muddana: search on Z-Library

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1

Quantum Mechanical Calculation of Noncovalent Interactions: A Large-Scale Evaluation of PMx, DFT, and SAPT Approaches

Li, Amanda, Muddana, Hari S., Gilson, Michael K.

Journal:

Journal of Chemical Theory and Computation

Year:

2014

Language:

english

File:

PDF, 854 KB

english, 2014

2

Data-Driven Mapping of Gas-Phase Quantum Calculations to General Force Field Lennard-Jones Parameters

Kantonen, Sophie M., Muddana, Hari S., Schauperl, Michael, Henriksen, Niel M., Wang, Lee-Ping, Gilson, Michael K.

Journal:

Journal of Chemical Theory and Computation

Year:

2020

Language:

english

File:

PDF, 1.54 MB

english, 2020

3

Correction

Muddana, Hari S., Chiang, Homer H., Butler, Peter J.

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 28 KB

english, 2012

4

Substrate Stiffness Regulates Cellular Uptake of Nanoparticles

Huang, Changjin, Butler, Peter J., Tong, Sheng, Muddana, Hari S., Bao, Gang, Zhang, Sulin

Journal:

Year:

2013

Language:

english

File:

PDF, 384 KB

english, 2013

5

Substrate Catalysis Enhances Single-Enzyme Diffusion

Muddana, Hari S., Sengupta, Samudra, Mallouk, Thomas E., Sen, Ayusman, Butler, Peter J.

Journal:

Journal of the American Chemical Society

Year:

2010

Language:

english

File:

PDF, 307 KB

english, 2010

6

Selectively manipulable acoustic-powered microswimmers

Ahmed, Daniel, Lu, Mengqian, Nourhani, Amir, Lammert, Paul E., Stratton, Zak, Muddana, Hari S., Crespi, Vincent H., Huang, Tony Jun

Journal:

Scientific Reports

Year:

2015

Language:

english

File:

PDF, 2.69 MB

english, 2015

7

The SAMPL4 hydration challenge: evaluation of partial charge sets with explicit-water molecular dynamics simulations

Muddana, Hari S., Sapra, Neil V., Fenley, Andrew T., Gilson, Michael K.

Journal:

Journal of Computer-Aided Molecular Design

Year:

2014

Language:

english

File:

PDF, 594 KB

english, 2014

8

Atomic Stress Propagation Reveals Allosteric Pathways in Proteins

Muddana, Hari S., Fenley, Andrew T., Gilson, Michael K.

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 36 KB

english, 2013

9

Prediction of SAMPL3 host–guest binding affinities: evaluating the accuracy of generalized force-fields

Hari S. Muddana, Michael K. Gilson

Journal:

Journal of Computer-Aided Molecular Design

Year:

2012

Language:

english

File:

PDF, 492 KB

english, 2012

10

Ed board

Muddana, Hari S., Fenley, Andrew T., Gilson, Michael K.

Journal:

Advances in Chronic Kidney Disease

Year:

2008

Language:

english

File:

PDF, 102 KB

english, 2008

11

Calculation and Visualization of Atomistic Mechanical Stresses in Biomolecules

Fenley, Andrew T., Muddana, Hari S., Gilson, Michael K.

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 124 KB

english, 2014

12

Bind3P: Optimization of a Water Model Based on Host-Guest Binding Data

Yin, Jian, Henriksen, Niel M., Muddana, Hari S., Gilson, Michael K.

Journal:

Journal of Chemical Theory and Computation

Year:

2018

Language:

english

File:

PDF, 1.02 MB

english, 2018

13

Physiological Membrane Tension Causes An Increase In Lipid Diffusion: A Single Molecule Fluorescence Study

Muddana, Hari S., Gullapalli, Ramachandra Rao, Tabouillot, Tristan, Butler, Peter J.

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 54 KB

english, 2009

14

Differentiating Lipid Phase Domains in Cells using Fluorescence Lifetime of DiI

Muddana, Hari S., Tabouillot, Tristan, Chiang, Homer H., Butler, Peter J.

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 48 KB

english, 2010

15

[IEEE 2006 IEEE International Workshop on Genomic Signal Processing and Statistics - College Station, TX, USA (2006.05.28-2006.05.30)] 2006 IEEE International Workshop on Genomic Signal Processing and Statistics - Elimination of indirect regulatory interactions in gene network inference

Muddana, Hari, Guntupalli, Jyothi, Polapragada, Chaitanya

Year:

2006

Language:

english

File:

PDF, 112 KB

english, 2006

16

[ASME ASME 2009 Summer Bioengineering Conference - Lake Tahoe, California, USA (Wednesday 17 June 2009)] ASME 2009 Summer Bioengineering Conference, Parts A and B - Tension Induces Changes in Lipid Lateral Diffusion in Model Fluid-Phase Membranes

Muddana, Hari S., Gullapalli, Ramachandra R., Butler, Peter J.

Year:

2009

Language:

english

File:

PDF, 162 KB

english, 2009

17

Blind prediction of host–guest binding affinities: a new SAMPL3 challenge

Hari S. Muddana, C. Daniel Varnado, Christopher W. Bielawski, Adam R. Urbach, Lyle Isaacs, Matthew T. Geballe, Michael K. Gilson

Journal:

Journal of Computer-Aided Molecular Design

Year:

2012

Language:

english

File:

PDF, 488 KB

english, 2012

18

Calculation of Host–Guest Binding Affinities Using a Quantum-Mechanical Energy Model

Muddana, Hari S., Gilson, Michael K.

Journal:

Journal of Chemical Theory and Computation

Year:

2012

Language:

english

File:

PDF, 3.80 MB

english, 2012

19

The electrostatic response of water to neutral polar solutes: Implications for continuum solvent modeling

Muddana, Hari S., Sapra, Neil V., Fenley, Andrew T., Gilson, Michael K.

Journal:

The Journal of Chemical Physics

Year:

2013

Language:

english

File:

PDF, 1.51 MB

english, 2013

20

[ASME ASME 2009 Summer Bioengineering Conference - Lake Tahoe, California, USA (Wednesday 17 June 2009)] ASME 2009 Summer Bioengineering Conference, Parts A and B - Shear Stress Induces Time- and Domain-Dependent Changes in Lipid Dynamics of Endothelial Cell Membranes

Tabouillot, Tristan, Muddana, Hari S., Butler, Peter J.

Year:

2009

Language:

english

File:

PDF, 102 KB

english, 2009

21

Photophysical characterization of Dye-Encapsulated Calcium Phosphate Nanoparticles

Muddana, Hari S., Morgan, Thomas T., Tabouillot, Tristan, Altinoglu, Erhan I., Adair, James H., Butler, Peter J.

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 64 KB

english, 2009

22

Blind prediction of SAMPL4 cucurbit[7]uril binding affinities with the mining minima method

Muddana, Hari S., Yin, Jian, Sapra, Neil V., Fenley, Andrew T., Gilson, Michael K.

Journal:

Journal of Computer-Aided Molecular Design

Year:

2014

Language:

english

File:

PDF, 1.72 MB

english, 2014

23

Bridging Simulations and Calorimetry: Computational Studies of Binding Thermodynamics and Entropy-Enthalpy Transduction

Gilson, Michael K., Fenley, Andrew T., Muddana, Hari

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 41 KB

english, 2014

24

Bridging Calorimetry and Simulation through Precise Calculations of Cucurbituril–Guest Binding Enthalpies

Fenley, Andrew T., Henriksen, Niel M., Muddana, Hari S., Gilson, Michael K.

Journal:

Journal of Chemical Theory and Computation

Year:

2014

Language:

english

File:

PDF, 2.34 MB

english, 2014

25

Enzyme Molecules as Nanomotors

Sengupta, Samudra, Dey, Krishna K., Muddana, Hari S., Tabouillot, Tristan, Ibele, Michael E., Butler, Peter J., Sen, Ayusman

Journal:

Journal of the American Chemical Society

Year:

2013

Language:

english

File:

PDF, 3.70 MB

english, 2013

26

Enthalpy Drives Phase Separation in Model Membranes: Evidence from Molecular Dynamics Simulations of Non-Lipid Amphiphiles Vitamin-E, triton-X, and Benzyl Alcohol

Butler, Peter J., Muddana, Hari S., Chiang, Homer

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 46 KB

english, 2011

27

Photophysics of Cy3-Encapsulated Calcium Phosphate Nanoparticles

Muddana, Hari S., Morgan, Thomas T., Adair, James H., Butler, Peter J.

Journal:

Year:

2009

Language:

english

File:

PDF, 379 KB

english, 2009

28

Using transient tracers: the regularization problem

Butler, Peter J., Muddana, Hari S., Chiang, Homer

Journal:

Deep Sea Research Part B. Oceanographic Literature Review

Year:

1988

Language:

english

File:

PDF, 89 KB

english, 1988

29

Tuning Membrane Phase Separation Using Nonlipid Amphiphiles

Muddana, Hari S., Chiang, Homer H., Butler, Peter J.

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 1.47 MB

english, 2012

30

Acoustofluidic Chemical Waveform Generator and Switch

Ahmed, Daniel, Muddana, Hari S., Lu, Mengqian, French, Jarrod B., Ozcelik, Adem, Fang, Ye, Butler, Peter J., Benkovic, Stephen J., Manz, Andreas, Huang, Tony Jun

Journal:

Analytical Chemistry

Year:

2014

Language:

english

File:

PDF, 6.43 MB

english, 2014

31

Endothelial Cell Membrane Sensitivity to Shear Stress is Lipid Domain Dependent

Tristan Tabouillot, Hari S. Muddana, Peter J. Butler

Journal:

Cellular and Molecular Bioengineering

Year:

2011

Language:

english

File:

PDF, 653 KB

english, 2011

32

Quantification of Membrane Free Area and Dynamic Undulations using Fluorescence Lifetime and Autocorrelation of Fluorescence Lifetime Fluctuations

Butler, Peter J., Muddana, Hari S.

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 34 KB

english, 2011

33

The SAMPL4 host–guest blind prediction challenge: an overview

Muddana, Hari S., Fenley, Andrew T., Mobley, David L., Gilson, Michael K.

Journal:

Journal of Computer-Aided Molecular Design

Year:

2014

Language:

english

File:

PDF, 1.84 MB

english, 2014

34

Encapsulation of Organic Molecules in Calcium Phosphate Nanocomposite Particles for Intracellular Imaging and Drug Delivery

Morgan, Thomas T., Muddana, Hari S., Altinoǧlu, Erhan İ., Rouse, Sarah M., Tabaković, Amra, Tabouillot, Tristan, Russin, Timothy J., Shanmugavelandy, Sriram S., Butler, Peter J., Eklund, Peter C.,

Journal:

Year:

2008

Language:

english

File:

PDF, 1.45 MB

english, 2008

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